Lecture Resources
From Ramunas Stepanauskas’ Lecture
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- GUNC: detection of chimerism and contamination in prokaryotic genomes
- Charting the Complexity of the Marine Microbiome through Single-Cell Genomics
- Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
From Phil Hugenholtz’ Lecture
- Prokaryotic taxonomy and nomenclature in the age of big sequence data
- Biological Species are Universal Across Life's Domains
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
From Stephen Giovanonni's Lecture
- SAR202 Genomes from the Dark Ocean Predict Pathways for the Oxidation of Recalcitrant Dissolved Organic Matter
- The abundant marine bacterium Pelagibacter simultaneously catabolizes dimethylsulfoniopropionate to the gases dimethyl sulfide and methanethiol
From Trina McMahon's Lecture
- Microbial species delineation using whole genome sequences
- Patterns and architecture of genomic islands in marine bacteria
- Contrasting patterns of genome-level diversity across distinct co-occurring bacterial populations
From Meren's Lecture
- Eco-evolutionary significance of domesticated retroelements in microbial genomes
- Discovery of nondiazotrophic Trichodesmium species abundant and widespread in the open ocean
- Single-amino acid variants reveal evolutionary processes that shape the biogeography of a global SAR11 subclade
- Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef
From Mária Džunková's Lecture
- Defining the human gut host-phage network through single-cell viral tagging
- Novel approaches in function-driven single cell genomics
- Capturing Single Cell Genomes of Active Polysaccharide Degraders: An Unexpected contribution of Verrucomicrobia
- Optofluidic Raman-activated cell sorting for targeted genome retrieval or cultivation of icrobial cells with specific function
- Rational design of microbial consortium of mucosal sugar utilizers reduces C diff colonization
- Synthase-selective exploration of a tunicate microbiome by activity-guided single-cell genomics
- CRAGE enables rapid activation of biosynthetic gene clusters in undomesticated bacteria