Schedule

Activities each day will begin at 8:30 am in the Alfond Room, on the ground floor of the Graham Shimmield Residence Hall.

We will break for lunch around 12 pm and resume for an afternoon session at 1:15 pm.

Monday
Morning
Introduction
Breakout groups – identifying key goals of the Jamboree Introduction to Single Cell Genomics
Tour of SCGC
Jupyterhub Orientation

Afternoon
Participant Research Symposium

Tuesday
Morning
Breakout groups – defining key QC challenges
Introduction to GORG and SCGC’s QC Workflows
Comparison of SAGs and MAGs

Afternoon
Quality Controls for the GORG-Dark Collection
QC Exploration for GORG-Dark plates of interest

Wednesday
Morning
Introduction to Read Classification using SAGs
The GORG-classifier software tutorial
Exploring GORG-classifier outputs for GORG-Dark

Afternoon
Other methods for metagenome integration
Data exploration using participant metagenomes
3pm: Group trip to Oven’s Mouth Preserve or other area land trust
5:30: Group dinner in Boothbay Harbor

Thursday
Morning
Metabolic annotation
Annotation of biosynthetic gene clusters
Exploration of annotations on GORG-Dark SAGs

Afternoon
Viral Signals within Microbial SAGs
Exploration of viruses within GORG-Dark SAGs

Friday
Morning
GORG-Consortium activities check-in
Data visualization discussions

Afternoon
Group and independent work