Schedule
Bioinformatics Workshop Schedule*
schedule subject to change
Overview
April 2: Arrival
April 3: Introduction and Overview of Microbial Single Cell Genomics
April 4: Use of SAGs in Quantitative Microbial Ecology
April 5: Exploring Microbial Genomes
April 6: Integration of SAG and Other ‘omics Data with anvi’o
April 7: Group Symposium and Synthesis
April 8: Departure
Instructors
Ramunas Stepanauskas – Bigelow Laboratory for Ocean Sciences
Julia Brown – Bigelow Laboratory for Ocean Sciences
Greg Gavelis – Bigelow Laboratory for Ocean Sciences
Melody Lindsay – Bigelow Laboratory for Ocean Sciences
Maria Pachiadaki – Woods Hole Oceanographic Institute
Florian Trigodet – Helmholtz Institute for Functional Marine Biodiversity
Remote Speakers
Stephen Giovanonni – Oregon State
Donovan Parks – University of Queensland
Katherine McMahon – University of Wisconsin
Murat Eren – University of Oldenburg
Maria Dzunkova – University of Valencia
Expanded Schedule
Tuesday April 2: Participants Arrive
Arrival via shuttle bus from PWM or their own transportation
Participant check-in
Wednesday April 3: Introduction to SCG
- 7:00 AM - 8:45 AM Continental breakfast for external participants and instructors
- 8:00 AM - 9:00 AM Pick up nametags and set up in Alfond Room
- 9:00 AM - 9:15 Introduction and Ice Breakers
- 9:15 AM Expert Lecture: Ramunas Stepanauskas
- 9:45 - 11 AM Introduction to course computational environment
- Lead by Julia Brown
- 11:00 AM SCGC Tour
- Lead by Ramunas Stepanauskas
- 12:00 PM - 1:15 PM Catered Lunch
- 1:15 PM - 4 PM Overview of SCGC Data Products and Quality Control
- Lead by Ramunas Stepanauskas and Greg Gavelis
- 5:15 Catered dinner for everyone
Thursday April 4: Use of SAGs in Quantitative Microbial Ecology
- 7:30 AM - 8:45 AM Continental breakfast for external participants and instructors
- 9:00 AM Morning Expert Lecture: Steven Giovanonni
- 9:30 AM - 9:45 AM Morning icebreaker/discussion
- 10:00 AM - 12:00 PM Hands-on: Quantitative analysis of SAG Abundance
- Maria Pachiadaki
- 12:00 PM - 1:15 PM Catered Lunch
- 1:15 PM Afternoon Expert Lecture: Donovan Parks
- 1:45 PM - 4:00 PM Metagenomic Read Classification using SAGs
- Greg Gavelis
- 5:15 Catered dinner for external participants and instructors
Friday April 5: Exploring Microbial Single Amplified Genomes
- 7:30 AM - 8:45 AM Continental breakfast for external participants and instructors
- 9:00 AM Expert Lecture: Katherine McMahon
- 9:30 - 9:45: Ice breaker/discussion
- 10:00 AM - 12:00 PM Metabolic and Functional Annotation of SAGs
- Meoldy Lindsay
- 12:00 PM - 1:15 PM Catered Lunch
- 1:15 - 3:30 Identifying Virus-Microbe interactions within SAGs
- Julia Brown and Alaina Weinheimer
- 3:30 PM Hike at nearby nature preserve
- 6:00 PM Group Dinner in Boothbay Harbor
Saturday April 6: Integration os SAG and other ‘omics data with Anvi’o
- 7:30 AM - 8:45 AM Continental breakfast for external participants and instructors
- 9:00 AM Expert Lecture: Murat Eren
- 9:30 AM - 12:00 AM Integration of multi-‘omic datasets with anvi’o
- Florian Trigodet
- 12:00 PM - 1:15 PM Catered Lunch
- 1:15 - 4:00 PM Continued Integration of multi’omic datasets with anvi’o
- 5:15 Catered dinner for external participants and instructors
Sunday April 7: Synthesis and Networking
- 7:30 AM - 8:45 AM Continental breakfast for external participants and instructors
- 9:00 AM Expert Lecture: Maria Dzunkova
- 9:30 AM - 10:00 AM Synthesis Group Discussion of SCG
- 10:30 AM - 12:00 PM Participant Symposium part 1
- 12:00 PM - 1:15 PM Catered Lunch
- 1:15 PM - 3:00 PM Participant Symposium part 2
- 3:00 PM - 5:00 PM Free time for follow up discussions and networking
- 5:00 PM Catered pizza dinner for all
April 8
Participant check-out
Participants depart via shuttle to PWM or their own transportation