Day 1
Github Repositories
Overview and QC
Data Pipeline Description and Exploration
Relevant Papers
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- Charting the Complexity of the Marine Microbiome through Single-Cell Genomics
- Improved genome recovery and integrated cell-size analyses of individual uncultured microbial cells and viral particles
- Prokaryotic taxonomy and nomenclature in the age of big sequence data
- Biological Species are Universal Across Life’s Domains
- GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database