Lesson Links
Day 1: Introduction and Overview of Microbial Single Cell Genomics
Morning: Course Introduction
Github: Day1AM_intro_to_jupyterhub
Afternoon: Understanding the SCGC workflow and data structure
Github: Day1PM_SCGC_data_intro
Day 2: Exploring Microbial Genomes
Morning: Tools for taxonomic assignment of microbial SAGs
Github: Day2AM_taxonomic_classification
Afternoon: Functional annotation of SAG Data
Github: Day2PM_annotations
Day 3: Use of SAGs in Quantitative Microbial Ecology
Morning: Meta'omic read recruitment to SAGs
Github: Day3AM_read_recruitment
Afternoon: Taxonomic and Functional characterization of meta’omics data using SAGs
Github: Day3PM_GORG-classifier
Day 4: Integration of SAG and Other ‘omics Data with anvi'o
Website: Single Cell ‘Omics with anvi'o
Github: Day4_anvio